markdown mode in emacs insists on doing this, and I guess it is
harmless.
Notmuch can be configured to exclude some tags while searching. You can list excluded tags with
- $ notmuch config get search.exclude_tags
- deleted
+ $ notmuch config get search.exclude_tags
+ deleted
To verify this is the reason of the discrepancy, add the excluded tags explicitly to your query.
- $ notmuch search --output=files -- folder:inbox tag:deleted
+ $ notmuch search --output=files -- folder:inbox tag:deleted
## Shouldn't notmuch support inline PGP?